Arch Linux

Description:

`r-rsamtools` statically links `r-rhtslib` and fails to build properly if either of those two packages or R is built with `option(lto)` (i.e., all three need to be built with `!lto`).


Additional info:

r 4.2.0-1
r-rhtslib 1.28.0-1 (AUR)
r-rsamtools 2.12.0-1 (AUR)

Upstream bug report against r-rsamtools: https://github.com/Bioconductor/Rsamtools/issues/36


Steps to reproduce:

A. fails:
1. install `r` from community repository
2. build and install `r-rhtslib` from AUR
3. build `r-rsamtools` from AUR

Last step fails with:

```
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘Rsamtools’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/christoph/Dokumente/Tools/aur/r-rsamtools/src/00LOCK-Rsamtools/00new/Rsamtools/libs/Rsamtools.so':
/home/christoph/Dokumente/Tools/aur/r-rsamtools/src/00LOCK-Rsamtools/00new/Rsamtools/libs/Rsamtools.so: undefined symbol: hts_open_format
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/christoph/Dokumente/Tools/aur/r-rsamtools/src/Rsamtools’
* restoring previous ‘/home/christoph/Dokumente/Tools/aur/r-rsamtools/src/Rsamtools’
```

B. works:
1. Build `r` locally with `options=(!lto)`
2. build and install `r-rhtslib` from AUR
3. build and install `r-rsamtools` from AUR