FS#70603 - [sagemath]: core dumped

Attached to Project: Community Packages
Opened by bill-auger (bill-auger) - Monday, 26 April 2021, 22:55 GMT
Last edited by Antonio Rojas (arojas) - Tuesday, 27 April 2021, 06:39 GMT
Task Type Bug Report
Category Packages
Status Closed
Assigned To Antonio Rojas (arojas)
Architecture All
Severity Low
Priority Normal
Reported Version
Due in Version Undecided
Due Date Undecided
Percent Complete 100%
Votes 0
Private No

Details

$ cat test-case.sage
T=var('T')
solve_mod(T == 3, 9)

$ sage test-case.sage
sig_error() without sig_on()
------------------------------------------------------------------------
/usr/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0x774d)[0x7f8db677874d]
/usr/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0x780c)[0x7f8db677880c]
/usr/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0xa946)[0x7f8db677b946]
/usr/lib/libc.so.6(+0x3cf80)[0x7f8db92b5f80]
/usr/lib/libc.so.6(kill+0xb)[0x7f8db92b61fb]
/usr/lib/python3.9/site-packages/sage/ext/memory.cpython-39-x86_64-linux-gnu.so(+0x3273)[0x7f8daf42d273]
/usr/lib/python3.9/site-packages/sage/ext/memory.cpython-39-x86_64-linux-gnu.so(+0x3490)[0x7f8daf42d490]
/usr/lib/libgmp.so.10(__gmp_tmp_reentrant_alloc+0x19)[0x7f8db6a4efa9]
/usr/lib/libgmp.so.10(__gmpz_n_pow_ui+0x7af)[0x7f8db6a611df]
/usr/lib/libpolys-4.2.0.so(_Z11nrnInitCharP9n_Procs_sPv+0xc2)[0x7f8d7c21ccb2]
/usr/lib/libpolys-4.2.0.so(_Z9nInitChar11n_coeffTypePv+0x343)[0x7f8d7c2153d3]
/usr/lib/python3.9/site-packages/sage/libs/singular/ring.cpython-39-x86_64-linux-gnu.so(+0x153c6)[0x7f8d7bbbe3c6]
/usr/lib/python3.9/site-packages/sage/rings/polynomial/multi_polynomial_libsingular.cpython-39-x86_64-linux-gnu.so(+0x25396)[0x7f8d7c6c7396]
/usr/lib/libpython3.9.so.1.0(_PyObject_MakeTpCall+0x38b)[0x7f8db95795fb]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x4b21)[0x7f8db9574941]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x2c9e)[0x7f8db9572abe]
/usr/lib/libpython3.9.so.1.0(+0x1294df)[0x7f8db956f4df]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x3c6)[0x7f8db95701e6]
/usr/lib/libpython3.9.so.1.0(+0x1294df)[0x7f8db956f4df]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x3c6)[0x7f8db95701e6]
/usr/lib/libpython3.9.so.1.0(+0x1294df)[0x7f8db956f4df]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x3c6)[0x7f8db95701e6]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalCodeWithName+0x51)[0x7f8db956e681]
/usr/lib/libpython3.9.so.1.0(PyEval_EvalCode+0x23)[0x7f8db9632593]
/usr/lib/libpython3.9.so.1.0(+0x1f385d)[0x7f8db963985d]
/usr/lib/libpython3.9.so.1.0(+0x13bc31)[0x7f8db9581c31]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x3c6)[0x7f8db95701e6]
/usr/lib/libpython3.9.so.1.0(+0x16b5d6)[0x7f8db95b15d6]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5004)[0x7f8db9574e24]
/usr/lib/libpython3.9.so.1.0(+0x16b5d6)[0x7f8db95b15d6]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5004)[0x7f8db9574e24]
/usr/lib/libpython3.9.so.1.0(+0x16b5d6)[0x7f8db95b15d6]
/usr/lib/libpython3.9.so.1.0(+0x1492d9)[0x7f8db958f2d9]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5fa)[0x7f8db957041a]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x1aa)[0x7f8db958125a]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x3c6)[0x7f8db95701e6]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x1aa)[0x7f8db958125a]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5fa)[0x7f8db957041a]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(+0x14beb4)[0x7f8db9591eb4]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x1184)[0x7f8db9570fa4]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5fa)[0x7f8db957041a]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x34e)[0x7f8db95813fe]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5fa)[0x7f8db957041a]
/usr/lib/libpython3.9.so.1.0(_PyFunction_Vectorcall+0x1aa)[0x7f8db958125a]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalFrameDefault+0x5fa)[0x7f8db957041a]
/usr/lib/libpython3.9.so.1.0(+0x128cbd)[0x7f8db956ecbd]
/usr/lib/libpython3.9.so.1.0(_PyEval_EvalCodeWithName+0x51)[0x7f8db956e681]
/usr/lib/libpython3.9.so.1.0(PyEval_EvalCode+0x23)[0x7f8db9632593]
/usr/lib/libpython3.9.so.1.0(+0x1fca4d)[0x7f8db9642a4d]
/usr/lib/libpython3.9.so.1.0(+0x1f82eb)[0x7f8db963e2eb]
/usr/lib/libpython3.9.so.1.0(+0x985bc)[0x7f8db94de5bc]
/usr/lib/libpython3.9.so.1.0(PyRun_SimpleFileExFlags+0x388)[0x7f8db94dd970]
/usr/lib/libpython3.9.so.1.0(Py_RunMain+0x32a)[0x7f8db965442a]
/usr/lib/libpython3.9.so.1.0(Py_BytesMain+0x39)[0x7f8db9625529]
/usr/lib/libc.so.6(__libc_start_main+0xd5)[0x7f8db92a0b25]
/usr/bin/python(_start+0x2e)[0x557c19dc904e]
------------------------------------------------------------------------
Attaching gdb to process id 358.
Cannot find gdb installed
GDB is not installed.
Install gdb for enhanced tracebacks.
------------------------------------------------------------------------
Unhandled SIGABRT: An abort() occurred.
This probably occurred because a *compiled* module has a bug
in it and is not properly wrapped with sig_on(), sig_off().
Python will now terminate.
------------------------------------------------------------------------
Aborted (core dumped)
This task depends upon

Closed by  Antonio Rojas (arojas)
Tuesday, 27 April 2021, 06:39 GMT
Reason for closing:  Fixed
Additional comments about closing:  sagemath 9.2-17
Comment by Eli Schwartz (eschwartz) - Tuesday, 27 April 2021, 01:20 GMT
Downstream bug, confirmed on Arch: https://labs.parabola.nu/issues/3017

Thanks for forwarding this!

Reporter mentioned that it occurred only after a system update yesterday, but not which packages were in the update...
Comment by Theova (Theova) - Tuesday, 27 April 2021, 06:39 GMT
The attached file contains the content of

grep -i upgraded /var/log/pacman.log | grep -iE "2021-04-25" > upgraded_packages.txt

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