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Tasklist

FS#64891 - [paraview] undefined symbol: nc_open

Attached to Project: Community Packages
Opened by Martin Diehl (MartinDiehl) - Thursday, 19 December 2019, 14:41 GMT
Last edited by Chih-Hsuan Yen (yan12125) - Monday, 23 December 2019, 03:29 GMT
Task Type Bug Report
Category Packages
Status Assigned
Assigned To Bruno Pagani (ArchangeGabriel)
Architecture All
Severity Low
Priority Normal
Reported Version
Due in Version Undecided
Due Date Undecided
Percent Complete 0%
Votes 0
Private No

Details

Currently, the paraview package also provides vtk and its python bindings.
When importing vtk in python, it currently fails with the message

/usr/lib/python3.8/site-packages/vtkmodules/../../../libvtkIOParallelNetCDF-pv5.7.so.1: undefined symbol: nc_open

It works when using the vtk package, but then paraview cannot be installed.

Additional info:
paraview: 5.7.0-3
netcdf: 4.7.3-1
python: 3.8.0-1

Steps to reproduce:
>python
> import vtk
This task depends upon

Comment by Chih-Hsuan Yen (yan12125) - Monday, 23 December 2019, 03:30 GMT
Another workaround: LD_PRELOAD=/usr/lib/libnetcdf.so python -c 'import vtk'
Comment by Bruno Pagani (ArchangeGabriel) - Monday, 17 February 2020, 17:37 GMT
This seems to be a linking error, it should be reported upstream I think.
Comment by Martin Diehl (MartinDiehl) - Tuesday, 18 February 2020, 13:38 GMT
many thanks!

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