Community Packages

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https://wiki.archlinux.org/title/Bug_reporting_guidelines

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Tasklist

FS#58789 - [python-pytables] Abort with hdf5 library version mismatch

Attached to Project: Community Packages
Opened by Ian Liu (ianliu) - Wednesday, 30 May 2018, 02:02 GMT
Last edited by Bruno Pagani (ArchangeGabriel) - Saturday, 02 June 2018, 13:27 GMT
Task Type Bug Report
Category Packages
Status Closed
Assigned To Ronald van Haren (pressh)
Andrzej Giniewicz (Giniu)
Bruno Pagani (ArchangeGabriel)
Architecture All
Severity High
Priority Normal
Reported Version
Due in Version Undecided
Due Date Undecided
Percent Complete 100%
Votes 0
Private No

Details

Description:

On an updated Arch Linux, running the following python script will core dump:

import tables
tables.open_file('foo.h5')

Here is the error message: https://ptpb.pw/jsrI

WORKAROUND: Downgrading the hdf5 package to 1.10.1-3 works.


Additional info:

~$ pacman -Syu && date
:: Synchronizing package databases...
core is up to date
extra is up to date
community is up to date
multilib is up to date
:: Starting full system upgrade...
there is nothing to do
Tue May 29 22:55:20 -03 2018

~$ pacman -Si python-pytables
Repository : community
Name : python-pytables
Version : 3.4.3-1
Description : A package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large
amounts of data
Architecture : x86_64
URL : http://www.pytables.org
Licenses : BSD
Groups : None
Provides : None
Depends On : lzo hdf5 python-numexpr blosc
Optional Deps : None
Conflicts With : None
Replaces : None
Download Size : 1184.21 KiB
Installed Size : 9167.00 KiB
Packager : Andrzej Giniewicz <gginiu@gmail.com>
Build Date : Thu 10 May 2018 07:50:02 AM -03
Validated By : MD5 Sum SHA-256 Sum Signature

~$ pacman -Si hdf5
Repository : community
Name : hdf5
Version : 1.10.2-3
Description : General purpose library and file format for storing scientific data
Architecture : x86_64
URL : https://www.hdfgroup.org/hdf5/
Licenses : custom
Groups : None
Provides : hdf5-cpp-fortran
Depends On : zlib libaec bash
Optional Deps : None
Conflicts With : None
Replaces : hdf5-cpp-fortran
Download Size : 2.87 MiB
Installed Size : 9.72 MiB
Packager : Bruno Pagani <archange@archlinux.org>
Build Date : Wed 23 May 2018 10:47:51 AM -03
Validated By : MD5 Sum SHA-256 Sum Signature
This task depends upon

Closed by  Bruno Pagani (ArchangeGabriel)
Saturday, 02 June 2018, 13:27 GMT
Reason for closing:  Fixed
Additional comments about closing:  python-pytables 3.4.3-2
Comment by Bruno Pagani (ArchangeGabriel) - Saturday, 02 June 2018, 08:23 GMT
Rebuild on the way.

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