FS#52148 - Version mismatch since hdf5_18

Attached to Project: Arch Linux
Opened by Hawky (p90) - Wednesday, 14 December 2016, 11:23 GMT
Last edited by Antonio Rojas (arojas) - Wednesday, 14 December 2016, 12:26 GMT
Task Type Bug Report
Category Packages: Extra
Status Closed
Assigned To No-one
Architecture All
Severity High
Priority Normal
Reported Version
Due in Version Undecided
Due Date Undecided
Percent Complete 100%
Votes 0
Private No

Details

Using hdf5 since the upgrade to hdf5_18 does not work anymore due to a version mismatch.

The exact error mesage is:
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.17, library is 1.8.18

Steps to reproduce:
open any hdf file in python.
This task depends upon

Closed by  Antonio Rojas (arojas)
Wednesday, 14 December 2016, 12:26 GMT
Reason for closing:  Fixed
Additional comments about closing:  pytables 3.3.0-2
Comment by Antonio Rojas (arojas) - Wednesday, 14 December 2016, 11:36 GMT
what does "open an hdf file in python" mean?
Comment by Hawky (p90) - Wednesday, 14 December 2016, 11:51 GMT
import table
a = table.open_file("test.hdf")

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