FS#49274 - [arpack] libparpack2: missing dependency on MPI

Attached to Project: Community Packages
Opened by alberto sartori (astor86) - Monday, 09 May 2016, 10:15 GMT
Last edited by Alexander F. Rødseth (xyproto) - Monday, 11 July 2016, 21:58 GMT
Task Type Bug Report
Category Packages
Status Closed
Assigned To Alexander F. Rødseth (xyproto)
Architecture All
Severity Low
Priority Normal
Reported Version
Due in Version Undecided
Due Date Undecided
Percent Complete 100%
Votes 0
Private No

Details

Description:

A link to the MPI libraries seems to have been omitted when creating the
parallel arpack shared library (note the two undefined symbols):

Additional info:
* package version: community/arpack-3.3.0-1

Steps to reproduce: (note the undifined symbols)

$ ldd -r /usr/lib/libparpack.so.2
linux-vdso.so.1 (0x00007fff7ed1c000)
libarpack.so.2 => /usr/lib/libarpack.so.2 (0x00007f536ec93000)
liblapack.so.3 => /usr/lib/liblapack.so.3 (0x00007f536e42a000)
libblas.so.3 => /usr/lib/libblas.so.3 (0x00007f536e20c000)
libmpi.so.12 => /usr/lib/openmpi/libmpi.so.12 (0x00007f536df27000)
libgfortran.so.3 => /usr/lib/libgfortran.so.3 (0x00007f536dbfd000)
libm.so.6 => /usr/lib/libm.so.6 (0x00007f536d8f8000)
libc.so.6 => /usr/lib/libc.so.6 (0x00007f536d556000)
libcblas.so => /usr/lib/libcblas.so (0x00007f536d335000)
libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007f536d11f000)
libatlas.so => /usr/lib/libatlas.so (0x00007f536c964000)
libopen-rte.so.12 => /usr/lib/openmpi/libopen-rte.so.12 (0x00007f536c6e7000)
libopen-pal.so.13 => /usr/lib/openmpi/libopen-pal.so.13 (0x00007f536c444000)
libdl.so.2 => /usr/lib/libdl.so.2 (0x00007f536c23f000)
librt.so.1 => /usr/lib/librt.so.1 (0x00007f536c037000)
libutil.so.1 => /usr/lib/libutil.so.1 (0x00007f536be34000)
libhwloc.so.5 => /usr/lib/libhwloc.so.5 (0x00007f536bbf8000)
libpthread.so.0 => /usr/lib/libpthread.so.0 (0x00007f536b9db000)
libquadmath.so.0 => /usr/lib/../lib/libquadmath.so.0 (0x00007f536b79c000)
/usr/lib64/ld-linux-x86-64.so.2 (0x0000558a6112b000)
libudev.so.1 => /usr/lib/libudev.so.1 (0x00007f536b77b000)
libpciaccess.so.0 => /usr/lib/libpciaccess.so.0 (0x00007f536b571000)
libxml2.so.2 => /usr/lib/libxml2.so.2 (0x00007f536b206000)
libcap.so.2 => /usr/lib/libcap.so.2 (0x00007f536b002000)
libresolv.so.2 => /usr/lib/libresolv.so.2 (0x00007f536adeb000)
libz.so.1 => /usr/lib/libz.so.1 (0x00007f536abd4000)
liblzma.so.5 => /usr/lib/liblzma.so.5 (0x00007f536a9ae000)
undefined symbol: mpi_comm_rank_ (/usr/lib/libparpack.so.2)
undefined symbol: mpi_allreduce_ (/usr/lib/libparpack.so.2)
This task depends upon

Closed by  Alexander F. Rødseth (xyproto)
Monday, 11 July 2016, 21:58 GMT
Reason for closing:  Fixed
Comment by Alexander F. Rødseth (xyproto) - Saturday, 28 May 2016, 12:35 GMT
Hi, thanks for reporting. I'll look into this.
Comment by Alexander F. Rødseth (xyproto) - Monday, 11 July 2016, 21:58 GMT
Using "ompi-f77" as the argument to pkg-config instead of just "ompi" did the trick. All symbols are found now.

Thanks again for reporting.

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